That would be Conrad :-). We should port the script to Python 3. -- Greg On 2/22/2023 8:56 AM, Eric Pettersen via Chimera-dev wrote:
For whoever is responsible for the "createPub" script...
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*From: *root <root@cgl.ucsf.EDU> *Subject: **RBVI web update results* *Date: *February 22, 2023 at 4:04:54 AM PST *To: *pett@cgl.ucsf.edu
Traceback (most recent call last): File "/usr/local/bin/createPub", line 188, in <module> main() File "/usr/local/bin/createPub", line 46, in main htmlList = formatIds(idList, url) File "/usr/local/bin/createPub", line 99, in formatIds output.extend(bufferPid(url, idBuffer, flush=True)) File "/usr/local/bin/createPub", line 109, in bufferPid data = formatPubmedId(idBuffer, url) File "/usr/local/bin/createPub", line 124, in formatPubmedId esr = eSummaryResult.eSummaryResult(data) File "/usr/local/lib/python2.7/site-packages/ncbi_eutils/eSummaryResult.py", line 43, in __init__ raise ExpatError xml.parsers.expat.ExpatError
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