Dear Chimera developer,
I've been working recently on a database on non-natural sidechains (http://www.swisssidechain.ch). Among else, we've developed a novel approach to accurately predict rotamers and our paper will be submitted within a few days.
I'd be very interested to develop a Chimera extension to visualize them (so far, we only have a PyMOL plug-in). I have rotamer library files in the same format as the Dunbrack 2002 rotamer library for each of the >200 sidechains included in my database. However, it appears that rotamer files (dependentRotamerData.zip) are encrypted in Chimera and I could not figure out how this encryption is done.
I was wondering if you could advise me something to help me (especially whether there are some hard-coded part that would need to be modified to include new sidechains in Chimera) and if you'd be interested in such an extension.
best
David
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David Gfeller, PhD
Molecular Modeling
Swiss Institute of Bioinformatics
http://ludwig-sun1.unil.ch/~dgfeller/homepage/