Hi there,
In the new builts of chimera, you have change the initial representation of the protein so that binding sites immediately appear and the rest of the protein is in ribbon (which is a great idea by the way). That means that you have a automatic analysis of binding site recognition. I wonder if you couldn't include a selection named "binding site" (or something similar), that would appear as a named selection and that we could call at the early beginning of the session.
Can't be lazier ....
Cheers,
JD
Dr. Jean-Didier Maréchal
Lecturer
Computational Biotechnological Chemistry @ Transmet
Unitat de Química Física
Departament de Química
Universitat Autònoma de Barcelona
Edifici C.n.
08193 Cerdanyola (Barcelona)
Tel: +34.935814936
e-mail: JeanDidier.Marechal@uab.es