The ‘movieFile’ argument to EnsembleLoader.loadEnsemble is expected to be a “metafile” as documented here: MD Movie <http://www.cgl.ucsf.edu/chimera/current/docs/ContributedSoftware/movie/movie...> (third paragraph after the first table) So, one option is to use a path to a metafile as that argument. To use the PDB file directly as the argument, you need to import loadEnsemble from the PDB format module, like so: from Trajectory.formats.Pdb import loadEnsemble Then call it as: loadEnsemble((“single”, "/Users/ME/Desktop/movie.pdb”), None, None, MovieDialog) —Eric Eric Pettersen UCSF Computer Graphics Lab
On May 14, 2017, at 6:21 AM, Pablo Solar Rodríguez <pablosolar.r@gmail.com> wrote:
Hello all!
It is possible to open the MD Movie trajectory with a custom format and a file from a plugin?
I am trying to do this:
from Movie.gui import MovieDialog from Trajectory import EnsembleLoader EnsembleLoader.loadEnsemble(MovieDialog, movieFile="/Users/ME/Desktop/movie.pdb") But I get this error
ValueError: Unknown trajectory format: 'MODEL 0'
File "/Applications/Chimera.app/Contents/Resources/share/Trajectory/EnsembleLoader.py", line 131, in loadEnsemble raise ValueError("Unknown trajectory format: '%s'" % format)
See reply log for Python traceback.
I think it is because I need to set the format (self.curFormat in the EnsembleLoader class) but it is not possible. How can I solve this?
Thank you so much
--
Pablo Solar Rodríguez
pablosolar.r@gmail.com <mailto:pablosolar.r@gmail.com>
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