Finding Coordinates of Maps
Dear Chimera Dev Team, I have a chimera session with the ~500 maps overlayed onto a tomogram saved, and I would like to get their coordinates in relation to the tomogram on which they are overlayed. I am unsure how to get started on this and wanted to know if you had any pointers as to where to start. Best, Max
Hi Max, How about trying the ChimeraX matrixget command to output the positions of all the models to a file? https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/matrixset.html This gives both the rotation (a 3x3 matrix in the first 3 columns) and a translation (4th column). The translation is in Angstroms, not in grid index units. Tom
On Mar 4, 2024, at 4:04 PM, Maximilian Julian Pokutta via Chimera-dev <chimera-dev@cgl.ucsf.edu> wrote:
Dear Chimera Dev Team,
I have a chimera session with the ~500 maps overlayed onto a tomogram saved, and I would like to get their coordinates in relation to the tomogram on which they are overlayed. I am unsure how to get started on this and wanted to know if you had any pointers as to where to start.
Best, Max _______________________________________________ Chimera-dev mailing list -- chimera-dev@cgl.ucsf.edu <mailto:chimera-dev@cgl.ucsf.edu> To unsubscribe send an email to chimera-dev-leave@cgl.ucsf.edu <mailto:chimera-dev-leave@cgl.ucsf.edu>
Hi Max, Since this mailing list is for Chimera, I assume you are using our old Chimera program, and not our current ChimeraX program. The answer I gave is for the old Chimera program. Tom
On Mar 4, 2024, at 4:04 PM, Maximilian Julian Pokutta via Chimera-dev <chimera-dev@cgl.ucsf.edu> wrote:
Dear Chimera Dev Team,
I have a chimera session with the ~500 maps overlayed onto a tomogram saved, and I would like to get their coordinates in relation to the tomogram on which they are overlayed. I am unsure how to get started on this and wanted to know if you had any pointers as to where to start.
Best, Max _______________________________________________ Chimera-dev mailing list -- chimera-dev@cgl.ucsf.edu <mailto:chimera-dev@cgl.ucsf.edu> To unsubscribe send an email to chimera-dev-leave@cgl.ucsf.edu <mailto:chimera-dev-leave@cgl.ucsf.edu>
participants (2)
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Maximilian Julian Pokutta -
Tom Goddard