Hi! It is very kind of you to do me a favor. Could you tell me how to get such a scenario like the attached image in CHIMERA Or assign different threshold to parts of EM density map? Thank you so much! Xin Su iHuman Institute ShanghaiTech University <suxin@shanghaitech.edu.cn>
Hi Xin Su, There is no option to combine different thresholds or to simulate and combine different resolutions in a single image. Probably the example image you sent was made by first creating several separate images, and then using some other image-editing program like Photoshop to put them together. If you have another question later: Usually we recommend address chimera-users@cgl.ucsf.edu for general questions. This chimera-dev address is more for questions about programming (python). Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 7, 2021, at 11:08 PM, 苏欣 <suxin@shanghaitech.edu.cn> wrote:
Hi! It is very kind of you to do me a favor. Could you tell me how to get such a scenario like the attached image in CHIMERA Or assign different threshold to parts of EM density map? Thank you so much! Xin Su
Dear Xin, I can confirm that, for a similar image https://twitter.com/jankosinski/status/1191458868561399808/photo/1 I rendered separate images for low and the high res map, overlaid them in Adobe Illustrator, and then used a gradient of transparency to blend the images. Best, Jan -- Group leader at European Molecular Biology Laboratory (EMBL) Hamburg Joint appointment Structural and Computational Biology Unit EMBL Heidelberg Group leader at Centre for Structural Systems Biology (CSSB) c/o DESY, Building 15 (CSSB), Room 02.247 Notkestraße 85 22607 Hamburg, Germany Phone: +49(0)40 8998-87573 http://www.embl-hamburg.de/research/unit/kosinski/ https://www.cssb-hamburg.de/research/research_groups/kosinski_group/index_en... <https://www.cssb-hamburg.de/research/research_groups/kosinski_group/index_en...>
On 8. Jan 2021, at 17:29, Elaine Meng <meng@cgl.ucsf.edu> wrote:
Hi Xin Su, There is no option to combine different thresholds or to simulate and combine different resolutions in a single image. Probably the example image you sent was made by first creating several separate images, and then using some other image-editing program like Photoshop to put them together.
If you have another question later: Usually we recommend address chimera-users@cgl.ucsf.edu for general questions. This chimera-dev address is more for questions about programming (python).
Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 7, 2021, at 11:08 PM, 苏欣 <suxin@shanghaitech.edu.cn> wrote:
Hi! It is very kind of you to do me a favor. Could you tell me how to get such a scenario like the attached image in CHIMERA Or assign different threshold to parts of EM density map? Thank you so much! Xin Su
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participants (3)
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Elaine Meng -
Jan Kosinski -
苏欣