
Hello, I would like to write to file all the vertices of the surface of a protein corresponding to each residue. Currently I'm exporting a mesh file of the surface fragments but this requires a lot of disk space and would probably be slower then simply writing the vertex list to file. Is there a way to do this using a python script? Thanks, Alex Gawronski

Hi Alex, I wrote a python script called surfvert.py that writes molecular surface vertices and nearest residues to a text file. It is on the Chimera Python script web page. http://socrates2.cgl.ucsf.edu/trac/chimera/wiki/Scripts Tom -------- Original Message -------- Subject: [chimera-dev] Surface Vertices From: Alex Gawronski Date: 7/26/09 11:37 AM
Hello,
I would like to write to file all the vertices of the surface of a protein corresponding to each residue. Currently I'm exporting a mesh file of the surface fragments but this requires a lot of disk space and would probably be slower then simply writing the vertex list to file. Is there a way to do this using a python script?
Thanks, Alex Gawronski
participants (2)
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Alex Gawronski
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Thomas Goddard