extensions outside the chimera directory
Dear All, I am preparing a series of practical for a MSc and I'd like a series of extensions I have to be accessible for students. Unfortunately, I do not have write access to the /usr/local/chimera directory of the pcs of the classrom and the OS images the machines boot on are not upgradable easily. Could I locate extensions in a user directory? Sorry for my ignorance.... Best, JD Dr. Jean-Didier Maréchal Lecturer Computational Biotechnological Chemistry @ Transmet Unitat de Química Física Departament de Química Universitat Autònoma de Barcelona Edifici C.n. 08193 Cerdanyola (Barcelona) Tel: +34.935814936 e-mail: JeanDidier.Marechal@uab.es ----- Missatge original ----- De: chimera-dev-request@cgl.ucsf.edu Data: Dimecres, Gener 20, 2010 9:00 pm Assumpte: Chimera-dev Digest, Vol 72, Issue 5
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Today's Topics:
1. StructureSequence.residues change (Eric Pettersen)
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Message: 1 Date: Tue, 19 Jan 2010 13:22:31 -0800 From: Eric Pettersen <pett@cgl.ucsf.edu> To: chimera-dev@cgl.ucsf.edu Subject: [chimera-dev] StructureSequence.residues change Message-ID: <BE4EE11C-A560-4D1D-A08B-5ED3AA052CF5@cgl.ucsf.edu> Content-Type: text/plain; charset="us-ascii"; Format="flowed"; DelSp="yes"
I've made a change in the 1.5 build that could affect script/extension writers that use the StructureSequence.residues list. That list can now contain None values. This is because now the sequence is the full sequence if available in SEQRES records even if some of the corresponding structure is missing. Such missing structure has None for the Residue value.
--Eric
Eric Pettersen UCSF Computer Graphics Lab http://www.cgl.ucsf.edu
Hi, go to Favorites/Preferences, then select the Category 'Tools'. You'll find a box, Locations, where you can add the directory containing the extensions. Giovanni On Jan 22, 2010, at 11:15 AM, Jean Didier Pie Marechal wrote:
Dear All,
I am preparing a series of practical for a MSc and I'd like a series of extensions I have to be accessible for students. Unfortunately, I do not have write access to the /usr/local/chimera directory of the pcs of the classrom and the OS images the machines boot on are not upgradable easily.
Could I locate extensions in a user directory? Sorry for my ignorance....
Best, JD
Dr. Jean-Didier Maréchal Lecturer Computational Biotechnological Chemistry @ Transmet Unitat de Química Física Departament de Química Universitat Autònoma de Barcelona Edifici C.n. 08193 Cerdanyola (Barcelona) Tel: +34.935814936 e-mail: JeanDidier.Marechal@uab.es
----- Missatge original ----- De: chimera-dev-request@cgl.ucsf.edu Data: Dimecres, Gener 20, 2010 9:00 pm Assumpte: Chimera-dev Digest, Vol 72, Issue 5
Send Chimera-dev mailing list submissions to chimera-dev@cgl.ucsf.edu
To subscribe or unsubscribe via the World Wide Web, visit http://www.cgl.ucsf.edu/mailman/listinfo/chimera-dev or, via email, send a message with subject or body 'help' to chimera-dev-request@cgl.ucsf.edu
You can reach the person managing the list at chimera-dev-owner@cgl.ucsf.edu
When replying, please edit your Subject line so it is more specific than "Re: Contents of Chimera-dev digest..."
Today's Topics:
1. StructureSequence.residues change (Eric Pettersen)
-------------------------------------------------------------------- --
Message: 1 Date: Tue, 19 Jan 2010 13:22:31 -0800 From: Eric Pettersen <pett@cgl.ucsf.edu> To: chimera-dev@cgl.ucsf.edu Subject: [chimera-dev] StructureSequence.residues change Message-ID: <BE4EE11C-A560-4D1D-A08B-5ED3AA052CF5@cgl.ucsf.edu> Content-Type: text/plain; charset="us-ascii"; Format="flowed"; DelSp="yes"
I've made a change in the 1.5 build that could affect script/extension writers that use the StructureSequence.residues list. That list can now contain None values. This is because now the sequence is the full sequence if available in SEQRES records even if some of the corresponding structure is missing. Such missing structure has None for the Residue value.
--Eric
Eric Pettersen UCSF Computer Graphics Lab http://www.cgl.ucsf.edu
participants (2)
-
Giovanni Cardone -
Jean Didier Pie Marechal