Hi Francesco, If by "the grid" you mean the potential map from DelPhi: If you have the academic version of DelPhi from the Honig Lab, you can run it with the Chimera tool DelPhiController (under Tools... Surface/Binding Analysis): <http://www.cgl.ucsf.edu/chimera/current/docs/ContributedSoftware/ delphicontroller/delphicontroller.html> This allows entering all the DelPhi run parameters and input/output filenames into a GUI instead of the text files needed to run DelPhi "manually." However, it does not help you make sure parameters are correctly assigned; you are still responsible for figuring out which DelPhi charge and radius files (also from the Honig lab) to use and making sure the atoms in your structure are named correctly to match with the parameters in these files. Also, DelPhiController is one of our older tools and may not be very easy to use. Elaine ----- Elaine C. Meng, Ph.D. meng@cgl.ucsf.edu UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco http://www.cgl.ucsf.edu/home/meng/index.html On May 6, 2009, at 10:14 AM, Francesco Pietra wrote:
Hi: I am considering to use dock3.5 score in DOCK6.2, which makes use of Delphi. Is any aid in chimera for builing the grid? thanks francesco