Hi

(1) I am faced by the coordinates for a nucleics/protein assembly being given in several bundle.pdb, while I need a sequential, continuous pdb file that comprises all nucleotides and proteins, not made of models

(2) If I load all the bundles to chimera, I see all expected ligands around the small molecule.

(3) With all models selected, copy/combine (adopting default first model as reference and allowing renaming chains) generates a new model. The new  model laks some proteins that should lie near the ligand, as described at (2).

I feel that I am missing something.

Thanks for advice

francesco pietra