P.S. That option was the source of the problem - #set silhouette 2017-09-08 10:22 GMT+02:00 James Starlight <jmsstarlight@gmail.com>:
Thank you so much, Elaine!
2017-09-06 18:34 GMT+02:00 Elaine Meng <meng@cgl.ucsf.edu>:
Hi Gleb, Yes, but then you don’t know which one of those commands might show the graphics driver problem! I guess you can experiment with which parts will work. The descriptions of the presets say what they include: <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/preset.html>
Then you can identify individual commands to do those things. Most of the stuff is in the “set” command, see <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/set.html>
Publication preset 2 includes white background and silhouette edges, commands:
set bgcol white set silhouette
It also turns off depth-cueing (mist):
~set depth
… and changes to “licorice” style ribbons (which doesn’t show helix and strand differently):
ribscale licorice
You might also be interested in other “set” options (see link above), and “lighting”: <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/lighting.html>
Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Sep 6, 2017, at 12:49 AM, James Starlight <jmsstarlight@gmail.com> wrote:
Thank you, Elaine!
Regarding presets Is it possible to define step-by-step some commands to obtain something like preset 2 visualization state?
Gleb