[Chimera-users] aligning PDB file

Hi Chimera Developers, I've used chimera mostly by GUI inerface [click]. How do I get the match-align work from command line in a python script?I read a good description at: http://plato.cgl.ucsf.edu/pipermail/chimera-users/2012-September/007934.html work flow of the script is:take in 2 pdb files and match->align them. I think, I will have to open them before running  'mols = openModels.list(modelTypes=[Molecule])'  ? How do I get the output saved in a FASTA file without MAV interface?