Thanks, that clears it up On Fri, Jun 22, 2018 at 1:09 PM, Elaine Meng <meng@cgl.ucsf.edu> wrote:
Hi Andrew, Your command attempt mystifies me, but I’ll go on the rest of what you said…
Just show a molecular surface (e.g. with command “surface”) and then save a file with the list of residue SASA values. You would save that file using the Render by Attribute tool (in menu under Tools… Structure Analysis); in that dialog’s menu choose File… Save Attributes. In the attribute-saving dialog you have to specify which attribute you want: “areaSAS” of “residues” (there is also the same attribute name for individual attoms)
Attribute-saving is described here, in the bottom section of the page: <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/render/ render.html#saving>
There is an option to restrict the save to the current selection, if you don’t want the list for all residues. I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Jun 22, 2018, at 12:01 PM, Andrew Macrae <amacrae@ucsc.edu> wrote:
Hello Chimera developers,
I'm trying to calculate sasa scores for a list of individual residues in chimera and cant quite get it. Ive tried commands and the define attribute menu. The command ive been using is
0.23:23/areaSAS
I've used similar things but I don't know what Im missing. Thanks for any help.
Cheers, Andrew MacRae UCSC