Hi,

You are looking for Protein Topology Diagram.
I recomend PDBSum:

http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?pdbcode=n/a&template=doc_about_prot.html

http://www.ebi.ac.uk/pdbsum/

Regards,

Flavio Augusto Vicente Seixas
Laboratory of Structural Biochemistry
Department of Biochemistry
Universidade Estadual de Maringá, PR, Brazil
http://www.uem.br

From: francesco oteri <francesco.oteri@gmail.com>
To: chimera BB <chimera-users@cgl.ucsf.edu>
Sent: Monday, June 10, 2013 3:23 PM
Subject: namd-l: protein schematic representaton

Good morning to everybody,

someone of you knows whether exist a program that creates schematic representation

of a protein like the one in plot b and d of the figure:

http://www.nature.com/nature/journal/v427/n6972/fig_tab/nature02165_F3.html

Greetings,

Francesco