On Jun 12, 2007, at 12:25 AM, Kenward Vaughan wrote:
On Mon, 2007-06-11 at 19:15 -0700, Terry Nelson wrote:
Hi, 1. I was wondering if Chimera has the option of finding for instance : "residues within 5 Angstrom of a bound protein inhibitor" or "residues within 3Ang. of solvent molecules",
select <description of atoms/residues> z<5.0 # or zr<5.0 or select <description of atoms/residues> za<5.0
The only thing I would add is that Chimera guesstimates what parts of a system are ligand, solvent, etc., so "<description of atoms/ residues>" in the above may simply be "ligand" or "solvent". You can see what Chimera has classified as ligand/solvent with "select ligand" or "sel solvent". --Eric Eric Pettersen UCSF Computer Graphics Lab pett@cgl.ucsf.edu http://www.cgl.ucsf.edu