Hi Zoey, What was the "Modeller web service job ID” reported in the log for your Modeller job? --Eric Eric Pettersen UCSF Computer Graphics Lab
On Nov 27, 2023, at 2:40 PM, Yang, Li-Yen via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:
Hello,
I am trying to use the modeler comparative tool in Chimera to model the structure of a protein (in fasta format) by another similar protein’s structure (in pdb format). I first associated this sequence (in fasta) with the corresponding chain in the pdb, and I used the modeller comparative tool to model the structure (I selected the fasta file as the target sequence and selected the corresponding chain in the pdb. )
However, I’m getting this error: _modeller.SequenceMismatchError: read_te_291E> Sequence difference between alignment and pdb :
From the log window, I didn’t get any other details beyond the above error. Does anyone know how I can figure out what is going wrong?
Thank you! I really appreciate it!
Best, Zoey _______________________________________________ Chimera-users mailing list -- chimera-users@cgl.ucsf.edu <mailto:chimera-users@cgl.ucsf.edu> To unsubscribe send an email to chimera-users-leave@cgl.ucsf.edu <mailto:chimera-users-leave@cgl.ucsf.edu> Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimera-users@cgl.ucsf.edu/