Hi George, For dumping results to a file, please see this previous post: http://plato.cgl.ucsf.edu/pipermail/chimera-users/2011-December/007044.html> For plotting, I don't know what you wanted on the Y axis, but the MD Movie plotting currently only includes distances, angles, and dihedrals. Of course, you could plot the distance between the H-bonding atoms. Regards, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Mar 26, 2012, at 9:14 AM, George Tzotzos wrote:
I'm wondering if there's a way to determine hbond formation during a trajectory in a similar way to the way the Plot distances tool in MD Movie/Analysis works.
Or dumb values to a file.
Many thanks in advance for any suggestions
Regards
George