Dear Chimera,

This is the other common error which strangely appears to occur on my PC much more frequently than on my iMac – using the same mol2 file

From: Paul Buscemi [mailto:busce004@umn.edu]
Sent: Saturday, May 20, 2017 5:02 PM
To: chimera-users@cgl.ucsf.edu BB
Subject: Input from Avogadro, solvation.

Dear Chimera,

Three basic questions:

I’m using Avogadro to construct my models and import as mol2 or pdb types. I often obtain messages as

or  that the atom is not “listed” .  

Is there a preparation I can use for transfer of models ? Alternatively do  you suggest any other program to construct models ?

2) If I use Tools to solvate a model,  should I use the “Start solvate tool” under MD and/or check “Periodic Boundary Conditions.

3) Im considering building a multicore system  ( two 16 core Xeon’s)  as a 64 bit system would Chimera take advantage of the multi-core system ?

Would the upgrade funds be better spent on memory ?

Regards,

Paul Buscemi,

UMN BICB