Hello,<br><br>I&#39;m trying to follow hydrogen bonds in a trajectory from amber. To do so, I would like to run a &#39;per frame&#39; script with something like:<br><br>hbonds spec :100 selRestrict cross relax false<br><br>
However, this fails because apparently no atoms are selected. This fails as well:<br><br>hbonds spec #0:100 selRestrict cross relax false<br>
<br>I can only see the hydrogen bonds if insert a<br><br>select :100<br><br>before the hbonds command. I wouldn&#39;t like to see the green &#39;aura&#39; of the selection, that&#39;s why I would like to make the selection within the hbonds command. I&#39;m probably missing something, but cannot figure out what.<br>
<br>Thank you!<br><br clear="all"><br>Miguel<br>-- <br><a href="http://www.pangea.org/mol/spip.php?rubrique2">http://www.pangea.org/mol/spip.php?rubrique2</a><br>~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~<br>
Je suis de la mauvaise herbe,<br>Braves gens, braves gens,<br>Je pousse en liberté<br>Dans les jardins mal fréquentés!<br> Georges Brassens