Hi,

I was trying to run the following script (below), which calculates RMSDs between 39 pdb models. Total iteration will be 741 with about 3000 match commands. After it has run for about 10 mins chimera will crash with an error: Chimera failed abnormally; the exit code was 3. I've printed the debug lines below the script:

Any suggestions..?

Cheers,

Sumitro

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open d:\result\pdb\1B0G.pdb

open d:\result\pdb\1DUZ.pdb

match #0:1-9.C@ca #1:1-9.C@ca

match #0:1-9.C@n,ca,c,o #1:1-9.C@n,ca,c,o

match #0:1-2.C,8-9.C@ca #1:1-2.C,8-9.C@ca

match #0:1-2.C,8-9.C@n,ca,c,o #1:1-2.C,8-9.C@n,ca,c,o

close #1

open d:\result\pdb\1EEY.pdb

match #0:1-9.C@ca #1:1-9.C@ca

match #0:1-9.C@n,ca,c,o #1:1-9.C@n,ca,c,o

match #0:1-2.C,8-9.C@ca #1:1-2.C,8-9.C@ca

match #0:1-2.C,8-9.C@n,ca,c,o #1:1-2.C,8-9.C@n,ca,c,o

close #1

open d:\result\pdb\1EEZ.pdb

match #0:1-9.C@ca #1:1-9.C@ca

match #0:1-9.C@n,ca,c,o #1:1-9.C@n,ca,c,o

match #0:1-2.C,8-9.C@ca #1:1-2.C,8-9.C@ca

match #0:1-2.C,8-9.C@n,ca,c,o #1:1-2.C,8-9.C@n,ca,c,o

close #1

open d:\result\pdb\1HHG.pdb

match #0:1-9.C@ca #1:1-9.C@ca

match #0:1-9.C@n,ca,c,o #1:1-9.C@n,ca,c,o

match #0:1-2.C,8-9.C@ca #1:1-2.C,8-9.C@ca

match #0:1-2.C,8-9.C@n,ca,c,o #1:1-2.C,8-9.C@n,ca,c,o

close #1

open d:\result\pdb\1HHI.pdb

match #0:1-9.C@ca #1:1-9.C@ca

match #0:1-9.C@n,ca,c,o #1:1-9.C@n,ca,c,o

match #0:1-2.C,8-9.C@ca #1:1-2.C,8-9.C@ca

match #0:1-2.C,8-9.C@n,ca,c,o #1:1-2.C,8-9.C@n,ca,c,o

close #1

…

…

…

--------------------------------------------------------

initializing general preferences

loading Tix

initializing graphics

create application

loading Pmw

creating main window

creating menus

creating toolbar

creating viewer

initializing OpenGL

initializing preferences

initializing dialogs

initializing COM

initializing extensions

CloneMenu failed inside of MenuAddOrInsert.

This application has requested the Runtime to terminate it in an unusual way.

Please contact the application's support team for more information.

Return code: 3

Press return or enter to to exit

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