On May 26, 2022, at 2:16 PM, Elaine Meng via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:

On May 26, 2022, at 12:48 PM, Elaine Meng via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:

[...] make a PDB file where the spheres are fake atoms [...]

However, this would not include your radius values, which would need to be set separately, e.g. with "setattr":
<https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/setattr.html>

Correction: a better/easier way than "setattr" to change atomic VDW radii in Chimera is with the "vdwdefine" command:

<https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/vdwdefine.html>

Best,
Elaine
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