Hi David, Any selection on the structure is automatically shown in the associated sequence in the alignment. The default is a dark green outline box. If you open the Region Browser (from the sequence window menu, Tools... Region Browser) you can see the region, named "Chimera selection," and its border color and interior color settings. If you want a different color scheme to be used, click on the color wells and edit the colors as desired. Best, Elaine On Dec 1, 2005, at 9:48 AM, David G. Morgan wrote:
Hi,
I'm learning to use the sequence alignment tools in chimera. I know that I can highlight sequences in the alignment window and select residues in the structure, but is it possible to do the opposite? In other words, I'd like to box or otherwise select some residue(s) in the structure and have that region highlighted or otherwise marked in the aligned sequence window.
David Gene Morgan Advanced Microscopy & Proteomics Molecular & Cellular Biology University of California at Davis 530 752 2693 (lab) 530 752 3085 (FAX)
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----- Elaine C. Meng, Ph.D. meng@cgl.ucsf.edu UCSF Computer Graphics Lab and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco http://www.cgl.ucsf.edu/home/meng/index.html