Dear Dmitry,
See command “measure correlation”
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/measure.html#correlation>

… or if you are fitting the maps (Fit in Map tool or “fitmap” command) it will be reported automatically in the tool dialog and/or Reply Log.
<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/fitmaps/fitmaps.html>
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/fitmap.html>

..or you can click the “Update” button in the Fit in Map tool to get the value without fitting (moving) the map.

I hope this helps,
ELaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Jul 9, 2019, at 7:34 AM, Dmitry A. Semchonok <semchonok@gmail.com> wrote:
>
> Dear colleagues,
> How to compare 2 volumes in Chimera by cross-correlation?
> Thank you.
> Sincerely,
> Dmitry


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