hi!
I am  having a small problem in fitting crystal structures into the EM reconstruction.

Problem definition

When I open the protein that I am trying to fit into the EM map along side the EM map, the Em Map shrinks. The EM map which is the super set, which holds 3 proteins appears shrunk with respect to the protein that I am trying to fit inside the EM Map and the crystal structure How am I to overcome this hurdle?
thanks
Jayant