Use match-> align to get a structural superposition and sequence alignment, then set your alignment type to AL2CO. Go to render by attribute and then hit the select by attribute tab. Select the range from 0-whatever your maximum is. Should be around 4 if you've got any conserved tryptophans. That will select all invariant residues. Jean-Paul Boissel <boissel@uni-mainz.de> wrote:
Hi,
By homology modelling, I got putative structures for five closely related amino acid transporters. Is there any script that will allow the quick selection and visualisation of the invariant residues on the structures? Thanks,
Jean-Paul
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