On Mar 18, 2011, at 9:39 AM, Tiziano Tuccinardi wrote:
Thanks Eric!!
It works very well!! Is it also possible to save the alignment file without omitting the all-gap columns?
Hi Tiziano,
I guess your question confuses me in two ways:
1) AFAIK, MatchMaker-generated alignments never have all-gap columns.
2) Although the MAV save dialog defaults to "omit all-gap columns", the script I sent doesn't. I would have to add few more lines of code to the script to get it to omit all-gap columns.
Maybe you were assuming it was omitting them when it wasn't?
--Eric