On Apr 15, 2016, at 1:16 AM, Michael Sharkey <michael.sharkey@ucd.ie> wrote:

Thanks Dave

I had saved a copy containing one of the two chains in the asymmetric unit, not realising that the waters didn't come with the protein (and heteroatoms).

Problem solved

Thanks again (for a very swift response)

Mike

On 6 April 2016 at 16:23, Gae, David Hyon <DavidHyon.Gae@ucsf.edu> wrote:

Hi Mike,

If you haven’t messed around the PDB file in WordPad. i think doing “ disp: hoh “ in command line should show the water.


Hope this help,
Dave
> On Apr 6, 2016, at 7:38 AM, Michael Sharkey <michael.sharkey@ucd.ie> wrote:
>
> Hi
>
> I'm trying to visualise water molecules associated with the crystal structure of an enzyme (specifically PDB ID: 1C1D).  They're listed when I open the pdb as a text file using WordPad, but I can't for the life of me get them to appear on the screen when I try to visualise the structure in Chimera (v. 1.10.2).
>
> What am I missing?
>
> Thanks in advance
>
> Mike
>
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>
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--

Michael Sharkey PhD,
UCD School of Biomolecular and Biomedical Science,
Conway Institute,
University College Dublin,

Tel. 01-7166932