Just a follow-up query. Suppose I want to run two different python scripts using the "runscript" command. Is it possible that instead of declaring them in two separate python files, I create one python file, declare two separate functions and call them one after the another using the "runscript" command? On Fri, Aug 25, 2023 at 4:59 AM Elaine Meng <meng@cgl.ucsf.edu> wrote:
Hi Prathvi, I don't know about startup using python, but you can start Chimera from the system command line with startup option --nogui and specify input files that could include a python script or Chimera command script for Chimera to execute. See the following help pages:
Chimera startup: <https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/startup.html>
System command-line Chimera startup options: <https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/options.html>
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Aug 24, 2023, at 1:18 AM, Prathvi Singh via Chimera-users < chimera-users@cgl.ucsf.edu> wrote:
Hi,
Is it possible to use python to execute commands on the command line of UCSF chimera without actually opening its GUI on the Windows platform?
If not, then how to use python to open its GUI and execute the commands?
I tried the "subprocess.Popen()" and "os.system()" methods to run its GUI by passing the path of chimera executable (version 1.17.1) to them but chimera is displaying an error with exit code 1 (snapshot attached). However, I am able to launch chimeraX (version 1.6.1) via these methods.
-- Prathvi Singh, Research Fellow, Department of Biological Sciences & Bioengineering, Indian Institute of Technology, Kanpur-208016