I have experience with APBS. PyMol has an APBS plugin. You can also use APBS using AutoDock Tools (http://autodock.scripps.edu/resources/adt) However, I suggest that you visit first the APBS website. There's plenty of information there (http://www.poissonboltzmann.org/apbs/) Regards George On Jun 26, 2012, at 3:48 PM, cantini@cerm.unifi.it wrote:
Regarding these programs Do you know how they worked and which are the best? I tried to installed them but without success .
Francesca
sette@uniroma2.it ha scritto:
Chimera don't make calculations of electrostatic potential. You can use other softwares for this, like APBS or Delphi.
Marco
George Tzotzos <gtzotzos@me.com> ha scritto:
Hi everybody,
Assuming that one knows the precise residues constituting a binding site, it is possible to calculate the electrostatic potential of these residues only? If yes, how?
Thanks for any advice
George _______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
Dr.Marco Sette, Ph.D.
Department of Chemical Sciences and Technology University of Rome, "Tor Vergata" via della Ricerca Scientifica, 00133, Rome, Italy e-mail: sette@uniroma2.it e-mail: m77it@yahoo.it Tel.: +39-0672594424 Fax: +39-0672594328
www.rete29aprile.it
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