There’s also a “volume” command “capFaces” option, e.g. volume #3 capFaces false <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/volume.html#dispsurf> Elaine
On Dec 1, 2017, at 2:10 AM, C.J. <biocjh@gmail.com> wrote:
Thank you very much! regards, Jianhao
2017-12-01 17:28 GMT+08:00 Gabor PAPAI <papai@igbmc.fr>: Hi Jianhao, You have to untick the “cap high values at box faces” to see surfaces bellow 0 threshold. You can find this option in Volume Viewer -> Features -> Surface and Mesh options at the bottom of the panel. Best regards, Gabor --- Gabor Papai IGBMC Integrated Structural Biology 1, rue Laurent Fries, Bp 10142 67404 Illkirch, France Tel: +33-3-69485288
On 1 Dec 2017, at 4:43 , C.J. <biocjh@gmail.com> wrote:
Hi specialists, I have a problem when adjusting the level of a map. If the level > 0, it seemed OK, but when it is less than 0, it showed a solid box. This is different from EMAN2. In EMAN2, the threshold less than 0 also works. I'm not sure whether the defining of level is the same as the threshold in EMAN2. Or is there any other way to show the density of a map as in EMAN2 with threshold less than 0? Some snapshots of the visualization in both programs are attached to the post. Thank you! regards, Jianhao