I am working with a protein in explicit water. Using AMBER tools, I have selected the 100 closest water molecules in and around the protein. Is there a way in Chimera to identify which amino acid residues that the waters are hydrogen bonded to? Or, is there a way to visualize which amino acids the water molecules are closest to?

 

Thanks!

 

 

John M. Beale, Jr., Ph.D.

Professor of Medicinal Chemistry and Pharmacognosy

Saint Louis College of Pharmacy

4588 Parkview Place

Saint Louis, Missouri  63110

314-446-8461

Cell: 314-315-0409

FAX: 314-446-8460

jbeale@stlcop.edu