I’ve got a system of three interacting proteins, and each of them is missing some linker regions in the crystal structure.

I’ve succesfully used the Modeller interface in Chimera to add these regions, but the problem I’m facing now is that it adds the residues without considering that other atoms from another protein of the system are in the way.

Is there a way to tell Modeller to be sensitive to other structures nearby?

Thanks for any comments, 

	Juan Eiros Zamora / PhD Student je714@ic.ac.uk / +44 (0) 7783018326 Imperial College London Imperial College Road SW7 2AZ | UK http://www.icb-cdt.co.uk/