Hi Elaine,
Here's a bit of background: this map is the result of a mapping using H2O as probe done by PLI [1]. I would like to adjust the contour levels to look like the red contour levels in Panel B in the attached figure (figure 4 from [1]).
How can I achieve this, or is this not possible in Chimera?
Thanks
Markus
[1] Verdonk et al., J. Med. Chem 2016, 59, 6891--6902; DOI: 10.1021/acs.jmedchem.6b00716
> -----Original Message-----
> From: Elaine Meng <meng@cgl.ucsf.edu>
> Sent: Tuesday, May 15, 2018 11:06 AM
> To: Markus Heller <mheller@cdrd.ca>
> Cc: chimera-users@cgl.ucsf.edu BB <chimera-users@cgl.ucsf.edu>
> Subject: Re: [Chimera-users] Volume viewer levels question
>
> Hi Markus,
> The behavior you describe is like entering some value that is higher than what is
> in your map, so there is no contour surface any more. Then when you move the
> slider, it resets to the maximum value found. Not sure why you expect higher
> levels, but maybe whatever program that wrote the file didn’t write bigger values,
> or didn’t write the format correctly.
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
>
> > On May 15, 2018, at 10:15 AM, Markus Heller <mheller@cdrd.ca> wrote:
> >
> > Hi all,
> >
> > I have an issue displaying a map file that I opened using the insightgrid.py
> script.
> >
> > When displaying the grid at the highest level I can get, the levels are still too
> low, but when I set the levels higher by typing something into the level field (e.g.
> 1.2e+03 instead of the 1e+03), the levels disappear altogether as shown in the
> second screenshot. As soon as I adjust the slider, the levels reset to 1e+03.
> What am I doing wrong?
> >
> > Thanks
> > Markus