I am using Chimera v-1.14 (build 42094) on my Debian Buster Linux
computer and have run into a problem saving a pdb file containing
two pdb files.
The files are attached to this email.This is a portion of the
combined flies:

The structure of the D21.pdb file isthe ball image.
I followed the instructions in the Building Structures, Modifying
and Saving Data in the Help pages.
However, when I open DD21Mod1 in LigPlot to identify the docked
ligand I get:

Clearly, this is not the ligand docked int the active site. I have
used LigPlot on a number of pdb files with good results and am
forced to conclude that there is a problem with D21Mod1.pdb.
I would appreciate help in solving this problem.
Thanks in advance.
--
Stephen P. Molnar, Ph.D.
www.molecular-modeling.net
614.312.7528 (c)
Skype: smolnar1