Hi,
 
I installed chimera software to my Ubuntu workstation. I want to add hydrogen bonds and charges to ligand molecules. I could not find the addh and addcharge executables under the chimera directory.
 
I would readlly appreciate if you can provide me basic guidelines for how to add hydrogen bonds and charges to ligand molecules using chimera from command-line (not from GUI).
 
Many thanks,
 
Zafer Aydin
AGÜ Computer Engineering Department
Kayseri, Turkey