Thanks for the response, A redownload worked... would you please take a stab at particularly #2 . For # 3 I saw an 2013 blog that multicore was not supported and I take this to still be the case. Regards, Paul
On May 22, 2017, at 4:48 PM, Eric Pettersen <pett@cgl.ucsf.edu> wrote:
This particular bug was fixed on the 19th — if you get the current daily build you won’t get this “coercing to Unicode” error.
—Eric
Eric Pettersen UCSF Computer Graphics Lab
From: Paul Buscemi [mailto:busce004@umn.edu <mailto:busce004@umn.edu>] Sent: Saturday, May 20, 2017 5:02 PM To: chimera-users@cgl.ucsf.edu <mailto:chimera-users@cgl.ucsf.edu> BB Subject: Input from Avogadro, solvation.
Dear Chimera,
Three basic questions:
I’m using Avogadro to construct my models and import as mol2 or pdb types. I often obtain messages as
<PastedGraphic-1.png>
or that the atom is not “listed” .
Is there a preparation I can use for transfer of models ? Alternatively do you suggest any other program to construct models ?
2) If I use Tools > Amber> solvate to solvate a model, should I use the “Start solvate tool” under when starting a MD run ?
3) Im considering building a multicore system ( two 16 core Xeon’s) as a 64 bit system would Chimera take advantage of the multi-core system ? Would the upgrade funds be better spent on memory or just a great CUDA GPU ?
Regards,
Paul Buscemi, UMN BICB _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu <mailto:Chimera-users@cgl.ucsf.edu> Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users <http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users>