Hi Hernando,

  This is a bug.  In Chimera 1.6 and the daily builds if you draw a volume subregion selection box (green outline box) using one map and then use it to crop another map which has different grid bounds or different grid spacing then the cropped region doesn't match the box bounds.  I've fixed it in tonight's Chimera daily build.

  In the broken Chimera versions you can avoid the problem by making both maps have identical grids using the vop resample command, for example, "vop resample #1 ongrid #0".

  Thanks for reporting this bug.

    Tom


-------- Original Message --------
Subject: [Chimera-users] density maps & sub-region selection.
From: Hernando J Sosa
To: chimera-users@cgl.ucsf.edu <chimera-users@cgl.ucsf.edu>
Date: 10/16/12 9:52 AM

Hi,

 

I am trying to select  subregions in two density  maps using the subregion selection option in the volume viewer.   When selecting the  same subregion  different sub-volumes  in the two maps are selected (there is a displacement between the ROIs along  the Z axis) even though the two maps  are aligned to each other (or appear to be aligned in the display window).   Both maps are in the MRC format and both have a voxel size of 2A/pix. ?    Ideally what I want to do is to select equivalent regions of the two maps and then save them as new density maps.   How can I best do this?

 

Thanks

 

Hernando.

 

 

UCSF Chimera version alpha 1.7 (build 36659)

on Windows 7 64b 



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