I've tried to run Modeller locally from Chimera (versión 1.11.2(build 41380) 2016-12-05 19:45 UTC. Platform Linux64. Windowing system: x11), but when it finishes, the model is not loaded inside Chimera. The log window give me the following output:
Model 0 (model1.pdb) appears to be a protein without secondary structure assignments.
Automatically computing assignments using 'ksdssp' and parameter values:
energy cutoff -0.5
minimum helix length 3
minimum strand length 3
Use command 'help ksdssp' for more information.
seq (len 437): added
target (len 437): model1.pdb (#0) chain A
seq (len 437): model1.pdb (#0) chain A
target (len 437): added
Target seq: added
Template structures:
model1.pdb (#0)
Run locally, the Modeller binary location: /usr/bin/mod9.19
Now, modeller is running locally...
Wrote /tmp/tmp73g3JY/template_struc/model1.pdb_0_0.pdb
MODELLER process output
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MODELLER process errors
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Could not find platform independent libraries <prefix>
Could not find platform dependent libraries <exec_prefix>
Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>]
'import site' failed; use -v for traceback
. I
can find Thank you in advance.