Hi Shriyash,
Chimera can read Maestro files, but not as a trajectory — I believe you will get a very large number of separate models.
Using VMD as an intermediary looks like if would work.  You can write a DCD file as per:

http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/12717.html

You can also write the corresponding PSF with Extensions $\rightarrow$ Modeling $\rightarrow$ Automatic PSF Builder, though you might need to have started from a PDB file — i’m not sure.  There’s a tutorial here:

Generating a Protein Structure File (PSF)

—Eric


Eric Pettersen
UCSF Computer Graphics Lab




On Jul 27, 2017, at 9:46 AM, Shriyash Upadhyay <shriyash.upadhyay@gmail.com> wrote:

Hello,

I am a researcher using DESMOND to run molecular dynamics simulations of protein-DNA interactions. However, I and others in my lab are most comfortable viewing trajectories and creating images in UCSF chimera. Is there a way to export DESMOND trajectories in a format that Chimera can open, either from maestro or some intermediate program like VMD?

Thanks,
Shriyash Upadhyay
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