Thanks Elaine. That certainly help. Now I have another question I see that the global search can be restricted in shift or rotation but can it also be restricted to a certain radius from the current position ? Thanks -----Original Message----- From: Elaine Meng [mailto:meng@cgl.ucsf.edu] Sent: Thursday, May 31, 2012 5:29 PM To: Hernando J Sosa Cc: chimera-users@cgl.ucsf.edu Subject: Re: [Chimera-users] fitmap Hi Hernando, Commands use "specifications" which for whole models are the model numbers (also shown in the Model Panel), for example: fitmap #0 #1 ...if the pdb structure is model 0 and the density map is model 1. There are also lots of options you could include after the model numbers, see <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/fitmap.html> I hope this helps, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On May 31, 2012, at 2:17 PM, Hernando J Sosa wrote:
HI,
What is the correct syntax to run the fitmap command?. I have a pdb structure named C1 and a density map (spider format) named MV (names as appear in the Model panel). If I try in the command line:
fitmap C1 MV
I get the error: fitmap invalid volume argument "MV"
What am I doing wrong?
Thanks