I’d previously replied off-list, answer paraphrased here: It may be necessary to use command “vop cover” as explained in this previous message: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/2016-April/012166.html> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/vop.html#cover> Some recent posts from Oliver regarding Chimera and Coot may also be useful: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/2016-May/012313.html> <http://plato.cgl.ucsf.edu/pipermail/chimera-users/2016-June/012392.html> Elaine
On Jul 4, 2016, at 6:11 AM, Cedric Govaerts <cgovaert@ulb.ac.be> wrote:
Hi all,
I would like to use Chimera to show a 2FO-FC or FO-FC electron density map (actually a tiny part of it) obtained from COOT (or directly from the refinement program).
If I open both the PDB file and the .map file, they are correctly open except that the bounding box from chimera truncate the map way to early.
That's because my PDB absolute coordinate sit in the origin and it seem I cannot use negative value for the boundaries of the volume/map.
How can I get the map to extend entirely over my protein ?
Thanks !
Cedric
-- Cedric Govaerts, Ph.D. Universite Libre de Bruxelles Campus Plaine. Phone :+32 2 650 53 77 Building BC, Room 1C4 203 Boulevard du Triomphe, Acces 2 1050 Brussels Belgium <lmhhpkhmepadlnpa.png> http://govaertslab.ulb.ac.be/ _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users