The following problems occurred while reading PDB file for dock0001.pdb
warning:  Ignored bad PDB record found on line 1
warning:  Ignored bad PDB record found on line 2
warning:  Ignored bad PDB record found on line 3
warning:  Ignored bad PDB record found on line 4
warning:  Ignored bad PDB record found on line 5
warning:  Ignored bad PDB record found on line 6
warning:  Ignored bad PDB record found on line 7
warning:  Ignored bad PDB record found on line 8
warning:  Ignored bad PDB record found on line 9
warning:  Ignored bad PDB record found on line 10
warning:  Ignored bad PDB record found on line 11
warning:  Ignored bad PDB record found on line 12
warning:  Ignored bad PDB record found on line 6462
warning:  Ignored bad PDB record found on line 6463
warning:  Ignored bad PDB record found on line 6464
warning:  Ignored bad PDB record found on line 6465
warning:  Ignored bad PDB record found on line 6466
warning:  Ignored bad PDB record found on line 6467
warning:  Ignored bad PDB record found on line 6468
warning:  Ignored bad PDB record found on line 6469
warning:  Ignored bad PDB record found on line 6470
warning:  Ignored bad PDB record found on line 6471
warning:  Ignored bad PDB record found on line 6472
Model 0 (dock0001.pdb) appears to be a protein without secondary structure assignments.
Automatically computing assignments using 'ksdssp' and parameter values:
  energy cutoff -0.5
  minimum helix length 3
  minimum strand length 3
Use command 'help ksdssp' for more information.
dock0001.pdb opened
Distance between CYS 93.B N and ASN 131.C N: 39.260
Distance between ASP 246.B N and ASN 131.C N: 20.607
Distance between ASP 162.B N and LYS 135.C N: 37.648
The following problems occurred while reading PDB file for dock0002.pdb
warning:  Ignored bad PDB record found on line 1
warning:  Ignored bad PDB record found on line 2
warning:  Ignored bad PDB record found on line 3
warning:  Ignored bad PDB record found on line 4
warning:  Ignored bad PDB record found on line 5
warning:  Ignored bad PDB record found on line 6
warning:  Ignored bad PDB record found on line 7
warning:  Ignored bad PDB record found on line 8
warning:  Ignored bad PDB record found on line 9
warning:  Ignored bad PDB record found on line 10
warning:  Ignored bad PDB record found on line 11
warning:  Ignored bad PDB record found on line 12
warning:  Ignored bad PDB record found on line 6462
warning:  Ignored bad PDB record found on line 6463
warning:  Ignored bad PDB record found on line 6464
warning:  Ignored bad PDB record found on line 6465
warning:  Ignored bad PDB record found on line 6466
warning:  Ignored bad PDB record found on line 6467
warning:  Ignored bad PDB record found on line 6468
warning:  Ignored bad PDB record found on line 6469
warning:  Ignored bad PDB record found on line 6470
warning:  Ignored bad PDB record found on line 6471
warning:  Ignored bad PDB record found on line 6472
Model 1 (dock0002.pdb) appears to be a protein without secondary structure assignments.
Automatically computing assignments using 'ksdssp' and parameter values:
  energy cutoff -0.5
  minimum helix length 3
  minimum strand length 3
Use command 'help ksdssp' for more information.
dock0002.pdb opened
Traceback (most recent call last):
  File "C:\Program Files (x86)\Chimera 1.5.1\share\chimera\tkgui.py", line 342, in openPath
    mols = chimera.openModels.open(path, type=ftype)
  File "C:\Program Files (x86)\Chimera 1.5.1\share\chimera\__init__.py", line 1537, in open
    models = func(filename, *args, **kw)
  File "C:\Program Files (x86)\Chimera 1.5.1\share\chimera\__init__.py", line 972, in _openPython
    loadFunc(sandboxName, fileName, f)
  File "ScriptDistance.py", line 5, in <module>
  File "C:\Program Files (x86)\Chimera 1.5.1\share\chimera\__init__.py", line 2225, in runCommand
    makeCommand(*args, **kw)
  File "C:\Program Files (x86)\Chimera 1.5.1\share\Midas\midas_text.py", line 65, in makeCommand
    f(c, args)
  File "C:\Program Files (x86)\Chimera 1.5.1\share\Midas\midas_text.py", line 911, in doDistance
    Midas.distance(sel, objIDs=objIDs, **kw)
  File "C:\Program Files (x86)\Chimera 1.5.1\share\Midas\__init__.py", line 1264, in distance
    '  You selected %d.' % numSelected)
MidasError: Exactly two atoms/axes/planes must be selected.  You selected 4.
Error reading ScriptDistance.py:
MidasError: Exactly two atoms/axes/planes must be selected.  You selected 4.

  File "C:\Program Files (x86)\Chimera 1.5.1\share\Midas\__init__.py", line 1264, in distance
    '  You selected %d.' % numSelected)

See reply log for Python traceback.