Hi Dr. Huang, I would like to use the "nogui" mode. Thanks a lot! Austin- --- On Tue, 7/10/12, Conrad Huang <conrad@cgl.ucsf.edu> wrote:
From: Conrad Huang <conrad@cgl.ucsf.edu> Subject: Re: [Chimera-users] RMSD calculation To: "Austin B. Yongye" <ybausty@yahoo.com> Cc: chimera-users@cgl.ucsf.edu Date: Tuesday, July 10, 2012, 9:18 AM Will you be running Chimera with a graphical interface? If so, then the Ensemble Cluster tool already prints the RMSD matrix to the Reply Log. If you want to get the RMSD in "nogui" mode, please let us know and we can figure something out.
Conrad
On 7/10/12 7:57 AM, Austin B. Yongye wrote:
Hello Chimera-developers/users: Does someone have a script that can perform pairwise backbone RMSD calculations for a group of pdb structures in a file and write out the RMSD matrix? This may already be implemented in the clustering routine. Just need to get the RMSDs. Thanks, Austin-
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