Hi Dave, You're welcome! The ring fill automatically tracks the color/transparency of the ring atoms, but you can be wily and make it appear to be independent by opening two copies of the structure and using one copy for the desired fill color/transparency, as suggested in this earlier post: <http://www.cgl.ucsf.edu/pipermail/chimera-users/2009-August/ 004162.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Feb 22, 2010, at 12:20 PM, David Chenoweth wrote:
Hi Elaine, Thanks for the help! Everything works fine now, I just forgot to hit enter after entering the probability. I was also wondering if the ring fill color and transparency be changed independent of the rest of the molecule? Thanks again, Dave