13 May
2011
13 May
'11
1:08 p.m.
Hi Dhiraj, You can measure domain rotation using the MatchMaker tool to make the needed alignments, and the "measure rotation" command. Here's a video showing the procedure for HIV capsid protein. http://www.cgl.ucsf.edu/chimera/videodoc/AlignDomains Tom
Hi I have the structure of two homologous protein. These proteins are dimeric. when I am superimposing chain A of one protein on to the chain A of other, it looks like chain B of one protein is related to chain B of other protein by rigid body rotation. How can I calculate the angle of rotation in chimera? Is there any way, I can draw a vector along beta sheet?
Thank you. Dhiraj