Hi Elaine, Thanks for this, absolutely excellent tool but I really need to script this, command line or python. I have 28 maps and 6 models per map you see... I don't think there's a command line implementation of this? Thanks, Kyle
On 19 Jan 2017, at 09:46, Elaine Meng <meng@cgl.ucsf.edu> wrote:
Hi Kyle, I can’t answer about the old script, but if it is feasible for you to do interactively, there is a "Values at Atom Positions" tool included in Chimera. It’s in the menu under Tools… Volume Data, and it assigns the interpolated values as an atom attribute. You can write out the values using the File menu of the Render by Attribute tool, which automatically pops up when you click the Histogram button to assign the values.
<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/density/density.html>
I hope this helps, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 18, 2017, at 7:36 PM, Kyle Morris <kylelmorris@berkeley.edu> wrote:
Dear chimera dev and users,
Can anyone confirm with the latest chimera version (i’m running v1.11.2 build 41376) if this python script for measuring map values at atoms works for them?
The script was reported previously on the users list here: http://plato.cgl.ucsf.edu/pipermail/chimera-users/2007-May/001587.html
For me I get a python import error: from VolumeViewer import Data_Region, full_region, Rendering_Options
Thanks for your insight!
Best wishes, Kyle