Hi Jeff, I wrote a short explanation on how to put together a conda environment with pychemera in this git repo: https://github.com/GrotjahnLab/guided_tomo_align You don't need all the files there, just pychimera.yml I don't know enough about the cluster conformations function help you, sadly. Best, Benja ________________________________ From: Chimera-users <chimera-users-bounces@cgl.ucsf.edu> on behalf of Jeff Saxon <jmsstarlight@gmail.com> Sent: Wednesday, December 9, 2020 7:01 AM To: chimera-users@cgl.ucsf.edu BB <chimera-users@cgl.ucsf.edu> Subject: [Chimera-users] Using UCSF Chimera inside python environment Dear Chimera Users, I would like to use chimera to do some calculations on PDB filles (mainly I am interesting to cluster conformations in multi-model PDB using Ensemble cluster) Could you explain to me how I could install chimera (I am using python3 with conda) in order that I could use some of Chimera's functions directly inside of my python scripts? I have already tried install package pychimers but did not succeed conda install -c insilichem pychimera nsatisfiableError: The following specifications were found to be incompatible with the existing python installation in your environment: Specifications: - pychimera -> python[version='2.7.*|>=2.7,<2.8.0a0'] - pychimera -> python[version='3.4.*|3.5.*'] Your python: python=3.8 May I use chimera with my python using alternative ways of installations? Thank you in advance! J. _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: https://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users