Dear All,

             I am confused about what input I need to provide to the findHbond command in the FindHBond midas module. This is the help() on the command.

 

 

findHBonds(models, intermodel=True, intramodel=True, donors=None, acceptors=None, distSlop=0.0, angleSlop=0.0, interSubmodel=False, cacheDA=False).

 

For example if I want to find all H bonds between a pre-selected group of residues in loop, saved as:

 

loop = chimera.selection.currentAtoms() and the rest of the protein molecule, what command would I have to run? I am assuming the output(such as the one given in the findHbonds runcommand) would be saved into a variable if I provide one?

 

Ahir

 

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