Hi Miriam, You can use the command "matrixcopy" to apply the rotation/translation of the second receptor model to the corresponding ligands. For example, if the second receptor is model 3 and the ligands that go with it are in model 4, try: matrixcopy 3 4 <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/matrixcopy.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Apr 11, 2010, at 9:23 PM, Miriam Gochin wrote:
I have a question about ViewDock. It works fine for one receptor and several ligands, but if I open a second receptor model and rotate it, then ligands I open with ViewDock for the second receptor are in the original (unrotated) position. Is there a way to correct the ligand positions for the current rotation?