I'm using 1.8. I will upgrade. Thanks. On Mon, Aug 25, 2014 at 11:30 AM, Elaine Meng <meng@cgl.ucsf.edu> wrote:
On Aug 24, 2014, at 2:04 PM, Milo Westler <milo@nmrfam.wisc.edu> wrote:
I also sent a second message asking how to write out the parameters determined from antechamber. (write prmtop doesn't work for me)
Hi Milo, I didn't see this other message (but maybe it hasn't come through for some reason), but I was able to use Write Prmtop on the ligand.pdb file you sent, in both Chimera 1.9 and the current pre-1.10 daily build. The result from Chimera 1.9 is attached. The files differed only very slightly, could have been rounding.
You should use at least Chimera 1.9, as there was a Write Prmtop bugfix in that version. <http://www.rbvi.ucsf.edu/chimera/docs/relnotes/1.9.html>
If you are using Chimera 1.9 or newer, but still get an error of some kind, you could report the bug (menu: Help… Report a Bug). Thanks! Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
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